r-optm

condav0.1.9

The popular population genetic software 'Treemix' by 'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967> estimates the number of migration edges on a population tree. However, it can be difficult to determine the number of migration edges to include. Previously, it was customary to stop adding migration edges when 99.8% of variation in the data was explained, but 'OptM' automates this process using an ad hoc statistic based on the second-order rate of change in the log likelihood.

License GPL-2.0-or-later0 versions0 deps93 weekly dl
44
/ 100
Health
safe to use

@0.1.9 is safe to use (health: 44/100)

Health breakdown0 – 100
10/25
maintenance
0/20
popularity
25/25
security
9/15
maturity
0/15
community
Vulnerabilities
0
none known

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First published · 2023-01-17T15:00:22.609000+00:00

Last updated · 2025-09-22T21:44:07.444000+00:00

r-optm — Health Score 44/100 | DepScope